Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKAP6_chr14_32324298_32842684	0/0	c0037	6960	1	0	0	0	1	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0038	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0039	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0040	6960	1	0	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0041	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0042	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	1/0	c0043	6960	1	0	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0044	6960	1	0	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0045	6960	1	0	0	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0046	6960	1	0	0	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0047	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0048	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0049	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0050	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0051	6960	1	0	0	1	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0052	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0053	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0054	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0055	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0056	6960	1	0	1	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0057	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0058	6960	1	0	0	0	0	1	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	c0059	6960	1	1	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP7_chr6_131130467_131288532	1/1	c0001	1047	223	51	31	114	7	18	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	c0002	1047	50	15	17	1	7	10	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	c0003	1047	10	10	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	c0004	1047	7	0	5	0	2	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	c0005	1047	5	5	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	c0006	1047	4	3	1	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	c0007	1047	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	c0008	1047	1	0	0	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	c0009	1047	1	1	0	0	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	c0010	1047	1	0	0	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP7_chr6_131130467_131288532	0/0	c0011	1047	1	0	0	1	0	0	copy fasta	AKAP7	chr6	131130467	131288532
AKAP8L_chr19_15375050_15423988	1/1	c0001	1941	244	75	53	81	4	29	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	c0002	1941	2	2	0	0	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	c0003	1941	2	1	1	0	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	c0004	1941	1	0	0	1	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	c0005	1941	1	0	0	1	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	c0006	1941	1	1	0	0	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	c0007	1941	1	0	0	0	0	1	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	c0008	1941	1	0	0	1	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8L_chr19_15375050_15423988	0/0	c0009	1941	1	1	0	0	0	0	copy fasta	AKAP8L	chr19	15375050	15423988
AKAP8_chr19_15348385_15384787	1/1	c0001	2079	263	76	58	83	8	36	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0002	2079	8	8	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0003	2079	2	0	0	2	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0004	2079	1	1	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0005	2079	1	0	0	0	0	1	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0006	2079	1	0	0	1	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0007	2079	1	0	0	0	0	1	copy fasta	AKAP8	chr19	15348385	15384787