JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HCN2_chr19_584881_622159	0/0	c0122	2670	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN3_chr1_155272463_155294848	0/1	c0001	2325	294	60	53	126	13	41	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0002	2325	14	14	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0003	2325	8	8	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0004	2325	3	3	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0005	2325	3	2	1	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0006	2325	2	0	0	2	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0007	2325	2	2	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0008	2325	2	0	2	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0009	2325	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0010	2325	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0011	2325	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0012	2325	1	1	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0013	2325	1	0	1	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0014	2325	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0015	2325	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0016	2325	1	0	0	0	0	1	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0017	2325	1	0	0	0	1	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0018	2325	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	c0019	2325	1	0	1	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN4_chr15_73314859_73373958	0/0	c0001	3612	219	44	39	99	8	29	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	1/0	c0002	3612	48	19	4	19	1	4	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0003	3612	22	8	6	0	2	6	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0004	3612	10	0	5	5	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/1	c0005	3612	8	0	7	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0006	3612	7	6	1	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0007	3612	6	6	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0008	3612	5	0	3	0	0	2	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0009	3612	2	1	1	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0010	3612	2	0	1	0	0	1	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0011	3612	2	2	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0012	3612	2	0	1	0	1	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0013	3612	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0014	3612	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0015	3612	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0016	3612	1	0	0	1	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0017	3612	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0018	3612	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0019	3612	1	0	1	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0020	3612	1	0	0	1	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0021	3612	1	0	0	1	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0022	3612	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	c0023	3612	1	0	1	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCRTR1_chr1_31612689_31632613	1/0	c0001	1278	164	40	26	79	4	14	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/1	c0002	1278	115	7	26	53	7	21	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0003	1278	20	11	4	0	0	5	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0004	1278	6	5	1	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0005	1278	6	5	1	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0006	1278	6	0	0	6	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0007	1278	5	4	1	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613