JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HCRTR1_chr1_31612689_31632613	0/0	c0008	1278	2	2	0	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0009	1278	2	2	0	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0010	1278	1	0	0	0	1	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0011	1278	1	1	0	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0012	1278	1	0	0	1	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0013	1278	1	0	0	0	0	1	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0014	1278	1	0	0	0	0	1	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0015	1278	1	0	0	1	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0016	1278	1	1	0	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	c0017	1278	1	0	1	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR2_chr6_55169515_55287617	0/0	c0001	1335	310	62	65	142	11	30	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	1/1	c0002	1335	36	8	6	7	5	8	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	c0003	1335	10	10	0	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	c0004	1335	3	2	1	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	c0005	1335	2	2	0	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	c0006	1335	1	0	1	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	c0007	1335	1	0	0	0	0	1	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	c0008	1335	1	1	0	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	c0009	1335	1	0	1	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	c0010	1335	1	0	0	0	0	1	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	c0011	1335	1	1	0	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	c0012	1335	1	0	0	1	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRT_chr17_42179060_42190452	1/1	c0001	396	375	93	62	164	16	38	copy fasta	HCRT	chr17	42179060	42190452
HCRT_chr17_42179060_42190452	0/0	c0002	396	1	1	0	0	0	0	copy fasta	HCRT	chr17	42179060	42190452
HCRT_chr17_42179060_42190452	0/0	c0003	396	1	0	0	0	0	1	copy fasta	HCRT	chr17	42179060	42190452
HCRT_chr17_42179060_42190452	0/0	c0004	396	1	0	0	0	0	1	copy fasta	HCRT	chr17	42179060	42190452
HCST_chr19_35897529_35909377	1/1	c0001	282	332	50	80	144	15	41	copy fasta	HCST	chr19	35897529	35909377
HCST_chr19_35897529_35909377	0/0	c0002	282	57	23	0	28	1	5	copy fasta	HCST	chr19	35897529	35909377
HCST_chr19_35897529_35909377	0/0	c0003	282	19	19	0	0	0	0	copy fasta	HCST	chr19	35897529	35909377
HDAC10_chr22_50240183_50256265	0/1	c0001	2010	310	78	61	133	6	31	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	1/0	c0002	2010	63	3	12	34	7	6	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0003	2010	23	0	3	18	0	2	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0004	2010	7	0	0	7	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0005	2010	5	0	1	3	0	1	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0006	2010	5	3	1	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0007	2010	4	0	2	0	2	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0008	2010	4	4	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0009	2010	3	0	0	0	0	3	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0010	2010	2	2	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0011	2010	2	2	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0012	2010	2	0	1	0	1	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0013	2010	1	0	0	0	0	1	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0014	2010	1	1	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0015	2010	1	0	0	0	0	1	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0016	2010	1	1	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0017	2010	1	1	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0018	2010	1	1	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0019	2010	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0020	2010	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0021	2010	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265