JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HDAC10_chr22_50240183_50256265	0/0	c0022	2010	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0023	2010	1	1	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0024	2010	1	0	0	0	0	1	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0025	1986	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0026	2010	1	0	1	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0027	2010	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0028	2010	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0029	2010	1	1	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	c0030	2010	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC11_chr3_13475306_13511416	1/0	c0001	1044	395	98	65	180	15	36	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/1	c0002	1044	23	0	5	10	1	6	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	c0003	1044	1	1	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	c0004	1044	1	1	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC1_chr1_32287083_32338626	1/1	c0001	1449	142	63	28	27	6	16	copy fasta	HDAC1	chr1	32287083	32338626
HDAC1_chr1_32287083_32338626	0/0	c0002	1449	1	1	0	0	0	0	copy fasta	HDAC1	chr1	32287083	32338626
HDAC1_chr1_32287083_32338626	0/0	c0003	1449	1	0	0	1	0	0	copy fasta	HDAC1	chr1	32287083	32338626
HDAC1_chr1_32287083_32338626	0/0	c0004	1449	1	1	0	0	0	0	copy fasta	HDAC1	chr1	32287083	32338626
HDAC1_chr1_32287083_32338626	0/0	c0005	1449	1	1	0	0	0	0	copy fasta	HDAC1	chr1	32287083	32338626
HDAC2_chr6_113928028_113976148	1/1	c0001	1467	397	80	78	191	12	34	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	c0002	1467	3	0	0	3	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC2_chr6_113928028_113976148	0/0	c0003	1467	2	0	2	0	0	0	copy fasta	HDAC2	chr6	113928028	113976148
HDAC3_chr5_141615881_141641849	0/1	c0001	1287	238	76	49	75	10	27	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	1/0	c0002	1287	142	9	21	90	4	17	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	c0003	1287	6	6	0	0	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	c0004	1287	1	0	0	1	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	c0005	1287	1	1	0	0	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC4_chr2_239043168_239406020	0/1	c0001	3270	97	23	18	31	6	18	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	1/0	c0002	3270	45	4	14	15	5	6	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0003	3270	23	18	2	3	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0004	3270	8	7	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0005	3270	8	6	2	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0006	3270	8	0	4	3	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0007	3270	7	7	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0008	3270	4	0	0	3	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0009	3270	4	4	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0010	3270	4	2	2	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0011	3270	3	0	1	0	0	2	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0012	3270	3	0	0	2	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0013	3270	2	0	0	2	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0014	3270	2	0	2	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0015	3270	2	1	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0016	3270	2	2	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0017	3270	1	0	0	1	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0018	3270	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0019	3270	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0020	3270	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0021	3270	1	0	0	1	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0022	3270	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0023	3270	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0024	3270	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020