JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HDAC4_chr2_239043168_239406020	0/0	c0025	3270	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0026	3270	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0027	3270	1	0	0	0	1	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0028	3270	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0029	3270	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0030	3270	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0031	3270	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0032	3270	1	0	0	1	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0033	3270	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0034	3270	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0035	3270	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	c0036	3270	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC5_chr17_44071753_44128641	0/1	c0001	3369	196	39	43	87	8	18	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	1/0	c0002	3369	80	38	13	23	2	3	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0003	3369	4	3	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0004	3369	3	3	0	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0005	3369	2	2	0	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0006	3369	2	0	0	2	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0007	3369	2	2	0	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0008	3369	1	0	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0009	3369	1	1	0	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0010	3369	1	0	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0011	3369	1	0	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0012	3369	1	0	0	1	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0013	3369	1	0	0	0	0	1	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	c0014	3369	1	0	0	1	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC6_chrX_48797067_48829976	1/1	c0001	3648	244	66	43	99	11	23	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0002	3648	6	0	6	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0003	3648	3	3	0	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0004	3648	3	0	0	3	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0005	3648	1	1	0	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0006	3649	1	0	0	1	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0007	3647	1	0	1	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0008	3647	1	0	0	1	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0009	3648	1	0	0	0	0	1	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0010	3648	1	1	0	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0011	3648	1	0	0	0	0	1	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0012	3648	1	0	0	0	0	1	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0013	3648	1	1	0	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0014	3648	1	0	0	1	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0015	3648	1	0	1	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0016	3648	1	0	0	1	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	c0017	3648	1	0	1	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC7_chr12_47777722_47824903	1/1	c0001	2976	283	59	53	124	11	34	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0002	2976	29	13	9	1	2	4	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0003	2976	13	11	2	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0004	2976	11	1	6	0	1	3	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0005	2976	8	0	0	8	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0006	2976	4	3	1	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0007	2976	4	1	2	0	1	0	copy fasta	HDAC7	chr12	47777722	47824903