JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HDAC7_chr12_47777722_47824903	0/0	c0008	2976	3	0	1	0	2	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0009	2976	2	2	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0010	2976	2	2	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0011	2976	2	0	0	2	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0012	2976	2	0	0	0	0	2	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0013	2976	2	2	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0014	2976	2	1	1	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0015	2976	1	0	0	0	1	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0016	2976	1	1	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0017	2976	1	0	0	0	0	1	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0018	2976	1	0	0	1	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0019	2976	1	1	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0020	2976	1	0	0	1	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0021	2976	1	0	1	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0022	2976	1	1	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0023	2976	1	0	0	0	0	1	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0024	2976	1	0	1	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0025	2976	1	0	0	0	0	1	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0026	2976	1	0	1	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	c0027	2976	1	0	0	1	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC8_chrX_72324516_72577843	0/0	c0001	1134	111	51	11	42	1	6	copy fasta	HDAC8	chrX	72324516	72577843
HDAC8_chrX_72324516_72577843	1/1	c0002	1134	95	17	18	36	4	18	copy fasta	HDAC8	chrX	72324516	72577843
HDAC8_chrX_72324516_72577843	0/0	c0003	1134	1	1	0	0	0	0	copy fasta	HDAC8	chrX	72324516	72577843
HDAC8_chrX_72324516_72577843	0/0	c0004	1134	1	1	0	0	0	0	copy fasta	HDAC8	chrX	72324516	72577843
HDAC9_chr7_18490749_19007416	1/1	c0001	3210	76	40	10	19	0	5	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	c0002	3210	49	12	7	18	0	12	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	c0003	3210	11	10	1	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	c0004	3210	8	7	1	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	c0005	3210	5	2	3	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	c0006	3210	2	2	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	c0007	3210	1	0	0	1	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	c0008	3210	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	c0009	3210	1	0	0	0	0	1	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	c0010	3210	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDAC9_chr7_18490749_19007416	0/0	c0011	3210	1	1	0	0	0	0	copy fasta	HDAC9	chr7	18490749	19007416
HDC_chr15_50236947_50270726	1/1	c0001	1989	338	57	64	152	16	47	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0002	1989	20	6	0	14	0	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0003	1989	18	0	8	9	0	1	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0004	1989	10	10	0	0	0	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0005	1989	10	10	0	0	0	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0006	1989	7	6	1	0	0	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0007	1989	7	1	4	0	2	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0008	1989	3	3	0	0	0	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0009	1989	2	0	0	2	0	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0010	1989	1	0	0	1	0	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0011	1989	1	0	1	0	0	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	c0012	1989	1	1	0	0	0	0	copy fasta	HDC	chr15	50236947	50270726
HDDC2_chr6_125270350_125306967	1/1	c0001	615	370	91	65	170	12	30	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	c0002	615	1	1	0	0	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	c0003	615	1	1	0	0	0	0	copy fasta	HDDC2	chr6	125270350	125306967