JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HDDC2_chr6_125270350_125306967	0/0	c0004	615	1	0	1	0	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	c0005	615	1	1	0	0	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC3_chr15_90924968_90937549	1/1	c0001	540	390	93	72	170	12	41	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	c0002	543	3	0	0	0	0	3	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	c0003	540	2	0	0	0	2	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	c0004	540	1	0	1	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	c0005	540	1	1	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	c0006	540	1	1	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	c0007	540	1	0	1	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	c0008	540	1	1	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDGFL1_chr6_22564566_22576666	1/0	c0001	756	234	58	41	100	13	21	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0002	756	70	4	13	43	1	9	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0003	756	52	6	2	42	0	2	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/1	c0004	756	49	21	17	0	3	7	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0005	759	13	1	5	3	1	3	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0006	774	3	2	1	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0007	756	3	0	0	3	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0008	756	2	0	0	2	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0009	756	2	0	0	2	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0010	756	1	0	0	1	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0011	756	1	1	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0012	774	1	1	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	c0013	756	1	0	1	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL2_chr19_4467297_4507207	0/0	c0001	2016	180	48	43	53	11	25	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	1/1	c0002	2016	144	29	28	60	7	18	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0003	2016	7	0	0	7	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0004	2017	4	1	1	1	0	1	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0005	2016	3	3	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0006	2017	3	1	0	2	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0007	2016	2	2	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0008	2016	2	2	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0009	2016	1	0	0	1	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0010	2016	1	0	1	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0011	2016	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0012	2016	1	0	0	1	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0013	2016	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0014	2016	1	0	1	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0015	2016	1	0	0	0	0	1	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0016	2016	1	0	0	0	0	1	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0017	2016	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0018	2016	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0019	2016	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0020	2016	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	c0021	2016	1	0	0	1	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL3_chr15_83122753_83212823	1/1	c0001	612	246	94	52	70	6	22	copy fasta	HDGFL3	chr15	83122753	83212823
HDGF_chr1_156737109_156756675	0/1	c0001	723	244	74	51	73	13	32	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	c0002	723	68	8	15	29	3	13	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	c0003	723	16	0	10	6	0	0	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	1/0	c0004	723	10	9	0	0	0	0	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	c0005	723	3	1	0	1	0	1	copy fasta	HDGF	chr1	156737109	156756675