JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HDGF_chr1_156737109_156756675	0/0	c0006	723	1	0	0	1	0	0	copy fasta	HDGF	chr1	156737109	156756675
HDHD2_chr18_47102410_47155500	1/1	c0001	780	359	68	70	174	14	31	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	c0002	780	6	6	0	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	c0003	780	1	0	0	0	0	1	copy fasta	HDHD2	chr18	47102410	47155500
HDHD3_chr9_113368422_113381986	0/1	c0001	756	249	52	56	94	13	33	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	1/0	c0002	756	181	38	28	105	5	4	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	c0003	756	20	7	2	7	0	4	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	c0004	756	11	0	0	11	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	c0005	756	1	1	0	0	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	c0006	756	1	0	0	0	0	1	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	c0007	756	1	0	0	1	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD5_chr22_17132520_17164277	0/0	c0001	1272	169	9	32	107	6	15	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	1/0	c0002	1272	105	25	12	48	3	16	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0003	1272	66	30	15	6	6	9	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0004	1272	37	11	7	16	0	3	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0005	1272	6	0	4	0	1	1	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0006	1272	5	4	1	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0007	1272	5	0	0	5	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/1	c0008	1272	5	0	2	0	0	2	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0009	1272	4	4	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0010	1272	3	3	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0011	1272	3	3	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0012	1272	3	0	0	2	0	1	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0013	1272	1	0	0	1	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0014	1272	1	1	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0015	1272	1	0	0	1	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0016	1272	1	1	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0017	1272	1	0	1	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0018	1272	1	0	0	0	0	1	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0019	1272	1	0	0	1	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0020	1272	1	0	0	1	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0021	1272	1	1	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0022	1272	1	1	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	c0023	1272	1	1	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDLBP_chr2_241222291_241320672	1/1	c0001	3807	270	29	48	138	11	42	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0002	3807	32	9	18	0	3	2	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0003	3807	31	29	2	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0004	3807	5	5	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0005	3807	3	3	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0006	3807	2	2	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0007	3807	2	2	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0008	3807	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0009	3807	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0010	3807	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0011	3807	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0012	3807	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0013	3807	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0014	3807	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0015	3807	1	1	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	c0016	3807	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672