JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HDX_chrX_84312878_84507453	1/1	c0001	2073	218	47	35	109	3	22	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0002	2073	20	0	3	11	4	2	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0003	2073	11	9	2	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0004	2073	6	6	0	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0005	2073	4	0	4	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0006	2073	4	0	1	3	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0007	2073	1	0	0	0	0	1	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0008	2073	1	1	0	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0009	2073	1	1	0	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0010	2073	1	0	0	1	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0011	2072	1	0	0	1	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	c0012	2073	1	0	0	0	0	1	copy fasta	HDX	chrX	84312878	84507453
HEATR1_chr1_236544005_236609516	0/0	c0001	6435	99	0	18	64	4	13	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0002	6435	73	15	6	41	2	9	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0003	6435	32	0	7	23	0	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0004	6435	22	2	4	8	1	7	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0005	6435	17	0	7	9	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0006	6435	17	14	2	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	1/0	c0007	6435	16	9	2	2	0	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0008	6435	10	0	0	9	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0009	6435	10	9	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0010	6435	6	0	0	6	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0011	6435	6	5	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0012	6435	5	4	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0013	6435	5	2	2	0	1	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0014	6435	4	4	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0015	6435	4	0	0	4	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0016	6435	3	3	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0017	6435	3	3	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0018	6435	2	1	0	0	1	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0019	6435	2	0	0	2	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0020	6435	2	0	0	2	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0021	6435	2	2	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0022	6435	2	0	0	2	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0023	6435	2	2	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0024	6435	2	2	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0025	6435	2	2	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0026	6435	2	0	2	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0027	6435	2	0	2	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0028	6435	2	0	0	0	0	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0029	6435	2	0	0	0	0	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0030	6435	2	0	0	2	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0031	6435	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0032	6435	1	0	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0033	6435	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0034	6435	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0035	6435	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0036	6435	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0037	6435	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0038	6435	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516