JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HEATR1_chr1_236544005_236609516	0/0	c0039	6435	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0040	6435	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0041	6435	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/1	c0042	6435	1	0	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0043	6435	1	0	0	0	1	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0044	6435	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0045	6435	1	0	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0046	6435	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0047	6435	1	0	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0048	6435	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0049	6435	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0050	6435	1	0	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0051	6435	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0052	6435	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0053	6435	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0054	6435	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0055	6435	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0056	6435	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0057	6435	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0058	6435	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0059	6435	1	0	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	c0060	6435	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR3_chr16_50060970_50112272	1/0	c0001	2043	142	36	23	64	5	13	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/1	c0002	2043	136	27	26	59	5	18	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0003	2043	17	15	2	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0004	2043	5	5	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0005	2043	3	3	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0006	2043	2	1	1	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0007	2043	2	0	0	2	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0008	2043	1	0	0	0	0	1	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0009	2043	1	0	1	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0010	2043	1	0	0	1	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0011	2043	1	0	1	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0012	2043	1	1	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0013	2043	1	0	0	1	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	c0014	2043	1	0	0	1	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR4_chr14_73473484_73563947	0/0	c0001	3081	163	33	29	74	4	23	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/1	c0002	3081	83	8	20	48	1	5	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	1/0	c0003	3081	51	4	10	22	3	11	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0004	3081	13	12	1	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0005	3081	5	4	1	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0006	3081	5	5	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0007	3081	5	5	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0008	3081	3	1	0	0	1	1	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0009	3081	3	3	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0010	3081	3	3	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0011	3081	2	0	1	0	1	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0012	3081	2	0	2	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0013	3081	2	0	2	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0014	3081	2	0	1	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947