JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HEATR4_chr14_73473484_73563947	0/0	c0015	3081	2	2	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0016	3078	2	1	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0017	3081	2	0	0	0	1	1	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0018	3081	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0019	3078	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0020	3081	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0021	3081	1	0	0	0	1	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0022	3081	1	0	1	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0023	3081	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0024	3081	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0025	3081	1	0	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0026	3081	1	0	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0027	3081	1	0	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0028	3081	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0029	3081	1	0	0	0	0	1	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0030	3081	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0031	3081	1	0	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0032	3081	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0033	3081	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0034	3081	1	0	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0035	3081	1	0	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0036	3081	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	c0037	3081	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR5A_chr14_31286788_31425550	0/0	c0001	6141	93	12	20	40	4	17	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0002	6141	86	6	16	47	4	13	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0003	6141	50	7	9	33	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0004	6141	28	7	7	13	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0005	6141	15	14	1	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0006	6141	12	5	0	7	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0007	6141	12	0	0	11	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0008	6141	6	6	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0009	6141	6	6	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0010	6141	5	2	1	2	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0011	6141	4	4	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0012	6141	3	2	1	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0013	6141	3	3	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0014	6141	3	0	0	2	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0015	6141	3	0	3	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0016	6141	3	3	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0017	6141	3	3	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0018	6141	2	2	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0019	6141	2	0	1	0	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0020	6141	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0021	6141	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0022	6141	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0023	6141	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0024	6141	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0025	6141	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0026	6141	1	0	1	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0027	6141	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550