Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKAP8_chr19_15348385_15384787	0/0	c0008	2079	1	1	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0009	2079	1	0	1	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0010	2079	1	1	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0011	2079	1	1	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0012	2079	1	0	0	1	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0013	2079	1	1	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0014	2079	1	1	0	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0015	2079	1	0	0	1	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP8_chr19_15348385_15384787	0/0	c0016	2079	1	0	1	0	0	0	copy fasta	AKAP8	chr19	15348385	15384787
AKAP9_chr7_91935862_92115673	0/0	c0001	11724	163	24	24	103	2	10	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0002	11727	71	16	15	28	2	10	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0003	11727	12	11	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0004	11727	10	8	2	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/1	c0005	11724	9	0	2	3	0	3	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0006	11727	4	4	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0007	11727	4	4	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0008	11724	3	0	0	3	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0009	11727	3	3	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0010	11727	2	0	0	1	0	1	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0011	11724	2	2	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0012	11727	2	2	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0013	11727	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0014	11727	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0015	11727	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	1/0	c0016	11724	1	0	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0017	11724	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0018	11724	1	0	0	1	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0019	11724	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0020	11724	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0021	11724	1	0	0	1	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0022	11724	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0023	11724	1	0	0	0	0	1	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0024	11724	1	0	0	1	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0025	11724	1	0	0	0	0	1	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0026	11724	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0027	11724	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0028	11724	1	0	0	1	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0029	11727	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0030	11727	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0031	11727	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0032	11727	1	1	0	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKAP9_chr7_91935862_92115673	0/0	c0033	11727	1	0	1	0	0	0	copy fasta	AKAP9	chr7	91935862	92115673
AKIP1_chr11_8906189_8925079	1/1	c0001	633	370	86	45	190	12	35	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	c0002	633	31	3	15	0	4	9	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	c0003	633	6	6	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	c0004	633	5	0	2	0	0	3	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	c0005	633	2	2	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	c0006	633	1	1	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	c0007	633	1	1	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	c0008	633	1	1	0	0	0	0	copy fasta	AKIP1	chr11	8906189	8925079