JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HEATR5A_chr14_31286788_31425550	0/0	c0028	6141	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0029	6141	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0030	6141	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0031	6141	1	0	0	0	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0032	6141	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0033	6141	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	c0034	6141	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5B_chr2_36975895_37089372	0/1	c0001	6216	90	14	17	40	9	9	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0002	6216	69	0	11	53	3	2	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0003	6216	37	12	3	16	1	5	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0004	6216	27	13	6	6	0	2	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0005	6216	19	3	7	1	0	8	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	1/0	c0006	6216	11	10	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0007	6216	9	0	6	3	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0008	6216	8	8	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0009	6216	5	0	0	5	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0010	6216	3	0	2	0	1	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0011	6216	3	0	0	3	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0012	6216	3	0	0	0	2	1	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0013	6216	2	2	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0014	6216	2	0	2	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0015	6216	2	2	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0016	6216	2	2	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0017	6216	2	2	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0018	6216	2	1	1	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0019	6216	2	0	0	2	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0020	6216	2	2	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0021	6216	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0022	6216	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0023	6216	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0024	6216	1	0	0	1	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0025	6216	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0026	6216	1	0	1	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0027	6216	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0028	6216	1	0	0	1	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0029	6216	1	0	0	1	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0030	6216	1	0	0	0	0	1	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0031	6216	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0032	6216	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0033	6216	1	0	0	0	0	1	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	c0034	6216	1	0	0	0	0	1	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR6_chr17_60036008_60083921	1/1	c0001	3546	181	56	41	65	5	12	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0002	3546	33	13	5	12	2	1	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0003	3546	7	6	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0004	3546	5	3	1	0	0	1	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0005	3546	4	4	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0006	3546	3	0	2	0	1	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0007	3546	2	0	1	1	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0008	3546	2	2	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0009	3546	2	1	0	1	0	0	copy fasta	HEATR6	chr17	60036008	60083921