JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HEATR6_chr17_60036008_60083921	0/0	c0010	3546	1	0	0	1	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0011	3546	1	0	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0012	3546	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0013	3546	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0014	3546	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0015	3546	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0016	3546	1	0	0	1	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0017	3546	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0018	3546	1	0	0	1	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0019	3546	1	0	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	c0020	3546	1	0	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR9_chr17_35849955_35873891	0/1	c0001	1713	256	57	47	111	8	32	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0002	1713	65	7	16	37	2	3	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0003	1713	27	1	2	23	0	1	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0004	1713	15	12	3	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0005	1713	3	0	0	3	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0006	1713	3	0	0	3	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0007	1713	2	2	0	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0008	1713	1	0	0	1	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0009	1713	1	1	0	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0010	1713	1	1	0	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0011	1713	1	1	0	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0012	1713	1	0	0	0	0	1	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0013	1713	1	0	0	1	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0014	1713	1	0	0	1	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	c0015	1713	1	0	0	0	0	1	copy fasta	HEATR9	chr17	35849955	35873891
HEBP1_chr12_12969870_13005265	1/1	c0001	570	386	75	70	180	16	43	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	c0002	570	4	1	2	1	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	c0003	570	3	3	0	0	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	c0004	570	1	0	0	0	0	1	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	c0005	570	1	1	0	0	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	c0006	570	1	0	0	1	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP2_chr6_138399223_138427197	1/1	c0001	618	224	49	52	81	10	30	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	c0002	618	47	36	6	0	2	3	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	c0003	618	32	5	1	26	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	c0004	618	4	3	0	1	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	c0005	618	3	0	0	3	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	c0006	618	1	1	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	c0007	618	1	0	0	0	0	1	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	c0008	618	1	0	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	c0009	618	1	0	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	c0010	618	1	0	0	1	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	c0011	618	1	0	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HECA_chr6_139130080_139185802	0/1	c0001	1632	158	62	29	41	6	19	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	1/0	c0002	1632	132	14	20	80	3	14	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	c0003	1632	14	5	6	0	1	2	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	c0004	1614	5	1	1	3	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	c0005	1632	3	1	2	0	0	0	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	c0006	1632	1	0	0	0	0	1	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	c0007	1632	1	1	0	0	0	0	copy fasta	HECA	chr6	139130080	139185802