JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HECTD1_chr14_31095117_31212793	1/0	c0001	7833	114	25	23	45	6	14	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0002	7833	52	30	3	19	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0003	7833	37	3	5	17	1	11	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0004	7833	28	14	9	0	0	5	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0005	7833	18	0	6	7	1	4	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0006	7833	14	0	4	10	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/1	c0007	7833	14	0	6	0	4	3	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0008	7833	12	0	0	12	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0009	7833	8	0	0	8	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0010	7833	5	0	0	4	0	1	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0011	7833	4	4	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0012	7833	4	0	0	4	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0013	7833	3	0	1	2	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0014	7833	3	3	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0015	7833	2	0	0	0	0	2	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0016	7833	2	0	0	2	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0017	7833	2	2	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0018	7833	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0019	7833	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0020	7833	1	0	0	0	1	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0021	7833	1	1	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0022	7833	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0023	7833	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0024	7833	1	0	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0025	7833	1	1	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0026	7833	1	1	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0027	7833	1	1	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0028	7833	1	1	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0029	7833	1	0	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0030	7833	1	0	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0031	7833	1	0	0	0	1	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0032	7833	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0033	7833	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0034	7833	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0035	7833	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0036	7833	1	0	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	c0037	7833	1	0	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD2_chr10_91405344_91519820	0/0	c0001	2331	9	8	1	0	0	0	copy fasta	HECTD2	chr10	91405344	91519820
HECTD2_chr10_91405344_91519820	0/0	c0002	2331	4	2	2	0	0	0	copy fasta	HECTD2	chr10	91405344	91519820
HECTD2_chr10_91405344_91519820	1/0	c0003	2331	1	0	0	0	0	0	copy fasta	HECTD2	chr10	91405344	91519820
HECTD2_chr10_91405344_91519820	0/0	c0004	2331	1	0	1	0	0	0	copy fasta	HECTD2	chr10	91405344	91519820
HECTD3_chr1_44997548_45016324	1/0	c0001	2586	181	35	28	84	9	24	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0002	2586	106	15	28	55	0	8	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0003	2586	34	15	7	9	1	2	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0004	2586	25	24	1	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/1	c0005	2586	13	1	2	0	5	4	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0006	2586	9	0	0	9	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0007	2586	6	0	0	6	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0008	2586	3	0	3	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0009	2586	3	0	0	3	0	0	copy fasta	HECTD3	chr1	44997548	45016324