JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HECTD3_chr1_44997548_45016324	0/0	c0010	2586	1	1	0	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0011	2586	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0012	2586	1	0	0	0	0	1	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0013	2586	1	0	0	0	1	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0014	2586	1	1	0	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0015	2586	1	0	1	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0016	2586	1	1	0	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0017	2586	1	0	1	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0018	2586	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0019	2586	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0020	2586	1	0	0	0	0	1	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0021	2586	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0022	2586	1	1	0	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0023	2586	1	0	1	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0024	2586	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	c0025	2586	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD4_chr12_112155195_112387431	0/0	c0001	13257	113	46	12	44	3	8	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0002	13257	65	7	11	45	0	2	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	1/1	c0003	13257	39	6	14	12	1	4	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0004	13258	9	4	1	3	0	1	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0005	13258	7	0	1	6	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0006	13258	4	0	1	2	0	1	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0007	13257	2	0	0	2	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0008	13257	2	0	0	2	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0009	13257	2	2	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0010	13257	2	2	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0011	13257	2	0	0	2	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0012	13257	1	0	1	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0013	13257	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0014	13257	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0015	13257	1	0	0	0	0	1	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0016	13257	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0017	13258	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0018	13257	1	0	1	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0019	13257	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0020	13257	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0021	13257	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0022	13257	1	0	0	0	0	1	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0023	13257	1	0	1	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0024	13257	1	0	1	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0025	13257	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0026	13258	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0027	13257	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0028	13257	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0029	13257	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0030	13257	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0031	13257	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0032	13257	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0033	13257	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	c0034	13257	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431