JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HECW1_chr7_43107647_43571001	1/0	c0001	4821	58	20	6	26	1	4	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0002	4821	28	12	7	6	1	2	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0003	4821	19	6	4	5	1	3	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0004	4821	14	4	0	8	0	2	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/1	c0005	4821	11	1	5	1	2	1	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0006	4821	10	4	0	3	1	2	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0007	4821	6	0	6	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0008	4821	5	5	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0009	4821	4	0	2	0	1	1	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0010	4821	4	0	2	0	0	2	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0011	4821	2	2	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0012	4821	2	2	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0013	4821	2	0	1	0	0	1	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0014	4821	2	2	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0015	4821	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0016	4821	1	0	1	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0017	4821	1	0	1	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0018	4821	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0019	4821	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0020	4821	1	0	1	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0021	4821	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0022	4821	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0023	4821	1	0	0	0	1	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0024	4821	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0025	4821	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0026	4821	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0027	4821	1	0	0	0	0	1	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0028	4821	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	c0029	4821	1	0	0	0	0	1	copy fasta	HECW1	chr7	43107647	43571001
HECW2_chr2_196189072_196598554	0/0	c0001	4719	35	20	6	0	1	8	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/1	c0002	4719	30	12	7	0	3	7	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	1/0	c0003	4719	6	5	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0004	4719	4	4	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0005	4719	4	4	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0006	4719	4	4	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0007	4719	3	3	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0008	4719	3	3	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0009	4719	3	0	1	0	0	2	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0010	4719	2	2	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0011	4719	2	2	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0012	4719	2	2	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0013	4719	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0014	4719	1	0	1	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0015	4719	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0016	4719	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0017	4719	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0018	4719	1	0	0	0	0	1	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0019	4719	1	0	1	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0020	4719	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	c0021	4719	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554