JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HEG1_chr3_124960710_125060997	0/0	c0096	4146	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	c0097	4167	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HELB_chr12_66297493_66343199	0/0	c0001	3264	90	7	22	52	3	6	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0002	3264	61	6	16	29	2	8	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/1	c0003	3264	51	2	11	29	1	7	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	1/0	c0004	3264	38	4	3	21	2	7	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0005	3264	19	0	0	16	0	3	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0006	3264	11	0	3	6	0	2	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0007	3264	10	10	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0008	3264	8	6	2	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0009	3264	7	7	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0010	3264	6	6	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0011	3264	6	5	1	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0012	3264	5	0	0	5	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0013	3264	5	5	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0014	3264	4	1	2	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0015	3264	4	4	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0016	3264	4	0	0	4	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0017	3264	4	0	0	4	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0018	3264	4	4	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0019	3264	4	4	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0020	3264	3	3	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0021	3264	3	3	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0022	3264	3	3	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0023	3264	3	3	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0024	3264	3	3	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0025	3264	3	0	0	0	0	3	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0026	3264	3	0	3	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0027	3264	2	2	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0028	3264	2	0	0	2	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0029	3264	2	1	1	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0030	3264	2	1	0	0	0	1	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0031	3264	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0032	3264	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0033	3264	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0034	3264	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0035	3264	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0036	3264	1	0	0	0	0	1	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0037	3264	1	0	1	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0038	3264	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0039	3264	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0040	3264	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0041	3264	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0042	3264	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0043	3264	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0044	3264	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0045	3264	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0046	3264	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0047	3264	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0048	3264	1	0	1	0	0	0	copy fasta	HELB	chr12	66297493	66343199