JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HELB_chr12_66297493_66343199	0/0	c0049	3264	1	0	0	0	0	1	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	c0050	3264	1	0	0	0	0	1	copy fasta	HELB	chr12	66297493	66343199
HELLS_chr10_94540788_94607099	0/0	c0001	2517	172	28	17	100	7	20	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	1/1	c0002	2517	162	46	36	46	9	23	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0003	2517	10	10	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0004	2517	3	0	0	3	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0005	2517	1	1	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0006	2517	1	1	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0007	2517	1	0	0	0	0	1	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0008	2517	1	0	0	1	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0009	2517	1	1	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0010	2517	1	1	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0011	2517	1	0	0	1	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0012	2517	1	1	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0013	2517	1	1	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0014	2517	1	0	1	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	c0015	2517	1	0	0	1	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELQ_chr4_83402346_83460823	0/1	c0001	3306	125	10	24	73	2	15	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0002	3306	98	14	20	46	5	13	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0003	3306	27	26	1	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0004	3306	17	7	5	0	2	3	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0005	3306	15	13	2	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0006	3306	4	2	0	1	0	1	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0007	3306	4	4	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0008	3306	4	4	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0009	3306	3	3	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0010	3306	3	3	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0011	3306	2	2	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0012	3306	2	2	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0013	3306	1	1	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0014	3306	1	1	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0015	3306	1	1	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0016	3306	1	1	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0017	3306	1	0	0	0	0	1	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0018	3306	1	0	0	0	1	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0019	3306	1	1	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0020	3306	1	1	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0021	3306	1	0	0	0	0	1	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	1/0	c0022	3306	1	0	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0023	3306	1	0	1	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	c0024	3306	1	0	1	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELT_chr4_185013490_185025953	1/1	c0001	729	400	81	71	185	15	46	copy fasta	HELT	chr4	185013490	185025953
HELT_chr4_185013490_185025953	0/0	c0002	729	53	8	7	33	3	2	copy fasta	HELT	chr4	185013490	185025953
HELT_chr4_185013490_185025953	0/0	c0003	729	1	1	0	0	0	0	copy fasta	HELT	chr4	185013490	185025953
HELZ2_chr20_63553086_63579239	0/0	c0001	7950	58	4	18	25	0	11	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0002	7950	40	0	3	31	2	4	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/1	c0003	7950	34	1	11	11	3	7	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0004	7950	27	21	3	1	0	2	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0005	7950	23	0	0	21	1	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0006	7950	9	0	5	0	3	1	copy fasta	HELZ2	chr20	63553086	63579239