JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HELZ2_chr20_63553086_63579239	0/0	c0007	7950	9	0	0	9	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0008	7950	8	4	0	0	2	2	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0009	7950	7	0	0	7	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0010	7950	6	0	5	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0011	7950	5	0	4	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0012	7950	4	0	2	0	1	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0013	7950	4	0	1	3	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0014	7950	4	4	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0015	7950	4	0	0	4	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0016	7950	3	0	0	3	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0017	7950	3	3	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0018	7950	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0019	7950	2	0	2	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0020	7950	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0021	7950	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0022	7950	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0023	7950	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0024	7950	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0025	7950	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0026	7950	2	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0027	7950	2	0	1	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0028	7950	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0029	7950	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0030	7950	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0031	7950	2	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	1/0	c0032	7950	2	0	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0033	7950	2	0	2	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0034	7950	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0035	7950	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0036	7950	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0037	7950	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0038	7950	2	0	0	0	0	2	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0039	7950	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0040	7950	2	0	2	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0041	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0042	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0043	7950	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0044	7950	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0045	7950	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0046	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0047	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0048	7950	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0049	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0050	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0051	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0052	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0053	7950	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0054	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0055	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0056	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239