Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKIP1_chr11_8906189_8925079	0/0	c0009	633	1	0	0	0	0	1	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	c0010	633	1	0	0	1	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIP1_chr11_8906189_8925079	0/0	c0011	633	1	0	0	1	0	0	copy fasta	AKIP1	chr11	8906189	8925079
AKIRIN1_chr1_38986276_39011059	1/1	c0001	579	414	88	71	191	18	44	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	c0002	579	11	10	1	0	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN1_chr1_38986276_39011059	0/0	c0003	579	1	0	0	1	0	0	copy fasta	AKIRIN1	chr1	38986276	39011059
AKIRIN2_chr6_87669860_87707233	1/1	c0001	612	392	77	75	174	16	48	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	c0002	612	13	13	0	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKIRIN2_chr6_87669860_87707233	0/0	c0003	612	1	0	1	0	0	0	copy fasta	AKIRIN2	chr6	87669860	87707233
AKNAD1_chr1_108810901_108862094	0/0	c0001	2511	82	10	23	42	1	6	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/1	c0002	2511	41	9	13	4	5	9	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0003	2511	26	12	3	10	0	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0004	2511	19	2	3	13	1	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0005	2511	18	4	3	10	0	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0006	2413	17	1	0	15	1	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0007	2511	16	0	2	13	0	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0008	2413	12	0	6	5	0	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0009	2511	12	1	1	10	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0010	2511	10	1	3	4	0	2	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0011	2511	10	1	0	9	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0012	2511	10	7	1	0	2	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0013	2511	8	3	2	3	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0014	2511	7	1	0	6	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0015	2511	6	0	3	0	2	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0016	2511	6	2	1	3	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	1/0	c0017	2511	6	5	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0018	2511	5	5	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0019	2511	4	0	0	4	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0020	2511	4	4	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0021	2511	4	0	1	0	1	2	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0022	2511	3	0	1	2	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0023	2511	3	1	0	2	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0024	2511	3	2	1	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0025	2511	3	0	2	0	1	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0026	2511	3	3	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0027	2511	3	1	0	0	0	2	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0028	2511	3	0	0	1	2	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0029	2511	2	2	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0030	2511	2	2	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0031	2511	2	1	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0032	2511	2	0	0	0	0	2	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0033	2511	2	0	2	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0034	2511	2	0	2	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0035	2511	2	2	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0036	2511	2	2	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0037	2511	2	1	0	0	0	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0038	2511	2	0	0	2	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0039	2511	2	0	2	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0040	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0041	2511	1	0	1	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094