JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
HELZ2_chr20_63553086_63579239	0/0	c0057	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0058	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0059	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0060	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0061	7950	1	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0062	7950	1	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0063	7950	1	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0064	7950	1	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0065	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0066	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0067	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0068	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0069	7950	1	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0070	7950	1	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0071	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0072	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0073	7950	1	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0074	7950	1	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0075	7950	1	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0076	7950	1	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0077	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0078	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0079	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0080	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0081	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0082	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0083	7950	1	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0084	7950	1	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0085	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0086	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0087	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0088	7950	1	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0089	7950	1	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0090	7950	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0091	7950	1	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0092	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0093	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0094	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0095	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0096	7950	1	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0097	7950	1	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0098	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0099	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0100	7950	1	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0101	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0102	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0103	7950	1	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0104	7950	1	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0105	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0106	7950	1	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239