JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HELZ2_chr20_63553086_63579239	0/0	c0107	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0108	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0109	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0110	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0111	7950	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0112	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0113	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0114	7950	1	0	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0115	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0116	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0117	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0118	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0119	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0120	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0121	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0122	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0123	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0124	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0125	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0126	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0127	7950	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0128	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0129	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0130	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0131	7950	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0132	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0133	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0134	7950	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0135	7950	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	c0136	7950	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ_chr17_67065444_67250196	0/1	c0001	5829	129	46	24	37	3	18	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0002	5829	66	23	13	22	2	6	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0003	5829	55	9	16	18	2	10	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	1/0	c0004	5829	6	0	4	0	1	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0005	5829	2	0	1	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0006	5829	2	2	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0007	5829	2	0	0	0	0	2	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0008	5829	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0009	5829	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0010	5829	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0011	5829	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0012	5829	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0013	5829	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0014	5829	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0015	5829	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0016	5829	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0017	5829	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0018	5829	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	c0019	5829	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HEMGN_chr9_97921791_97943172	1/1	c0001	1455	282	62	48	123	15	32	copy fasta	HEMGN	chr9	97921791	97943172