JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HEMGN_chr9_97921791_97943172	0/0	c0002	1455	27	2	14	2	0	9	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	0/0	c0003	1455	2	0	0	2	0	0	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	0/0	c0004	1455	1	0	0	1	0	0	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	0/0	c0005	1455	1	0	0	0	1	0	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	0/0	c0006	1455	1	0	0	0	0	1	copy fasta	HEMGN	chr9	97921791	97943172
HEMK1_chr3_50564522_50601166	0/0	c0001	1017	170	41	24	75	7	23	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	1/1	c0002	1017	128	18	27	72	3	6	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	c0003	1017	13	13	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	c0004	1017	3	2	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	c0005	1017	2	0	2	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	c0006	1017	1	0	0	0	0	1	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	c0007	1017	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	c0008	1017	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	c0009	1017	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HENMT1_chr1_108643295_108666093	1/1	c0001	1182	416	75	81	197	13	48	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	c0002	1182	7	7	0	0	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	c0003	1182	5	0	2	0	3	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	c0004	1182	4	4	0	0	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	c0005	1182	4	4	0	0	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	c0006	1182	2	0	0	2	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	c0007	1182	1	1	0	0	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	c0008	1182	1	0	0	1	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	c0009	1182	1	0	1	0	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	c0010	1182	1	1	0	0	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HEPACAM2_chr7_93183534_93231469	0/0	c0001	1389	352	78	56	173	8	37	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	c0002	1389	6	5	1	0	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	c0003	1389	4	3	1	0	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	c0004	1389	2	0	0	2	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	c0005	1389	1	1	0	0	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	c0006	1389	1	0	0	0	0	1	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	c0007	1389	1	0	0	1	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	c0008	1389	1	1	0	0	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM_chr11_124914205_124941047	0/0	c0001	1251	252	44	35	140	7	26	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0002	1251	46	7	15	13	7	4	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	1/1	c0003	1251	40	4	18	2	2	12	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0004	1251	34	10	1	20	0	3	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0005	1251	14	0	0	14	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0006	1251	10	4	2	2	0	2	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0007	1251	6	6	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0008	1251	5	0	2	0	0	3	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0009	1251	3	3	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0010	1251	2	1	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0011	1251	2	2	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0012	1251	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0013	1251	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0014	1251	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0015	1251	1	0	0	1	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0016	1251	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	c0017	1251	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPHL1_chr11_94016354_94119208	0/1	c0001	3480	289	45	55	139	8	41	copy fasta	HEPHL1	chr11	94016354	94119208