JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HEPHL1_chr11_94016354_94119208	1/0	c0002	3480	14	13	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0003	3480	12	0	0	12	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0004	3480	8	8	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0005	3480	6	6	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0006	3480	5	0	0	5	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0007	3480	3	3	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0008	3480	2	2	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0009	3480	2	2	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0010	3480	2	0	0	2	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0011	3480	2	0	0	2	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0012	3480	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0013	3480	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0014	3480	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0015	3480	1	0	0	0	0	1	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0016	3480	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0017	3480	1	0	0	0	0	1	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0018	3480	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0019	3480	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0020	3480	1	0	0	0	0	1	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0021	3480	1	0	1	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0022	3480	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0023	3480	1	0	1	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0024	3480	1	0	0	0	1	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0025	3480	1	0	1	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0026	3480	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0027	3480	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0028	3480	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0029	3480	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0030	3480	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0031	3480	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0032	3480	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0033	3480	1	0	0	0	1	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	c0034	3480	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPH_chrX_66159247_66272389	1/1	c0001	3477	121	3	27	68	6	15	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0002	3477	56	38	13	0	2	3	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0003	3477	24	19	5	0	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0004	3477	3	3	0	0	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0005	3477	2	0	0	2	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0006	3477	2	0	0	2	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0007	3477	2	0	0	2	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0008	3477	1	0	0	0	1	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0009	3477	1	0	0	1	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0010	3477	1	1	0	0	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0011	3477	1	0	0	1	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0012	3478	1	0	0	1	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0013	3477	1	0	1	0	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0014	3477	1	1	0	0	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	c0015	3477	1	1	0	0	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPN1_chr11_124914250_124925677	0/0	c0001	267	331	70	48	172	11	30	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	1/1	c0002	267	74	16	26	17	2	11	copy fasta	HEPN1	chr11	124914250	124925677