JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HEPN1_chr11_124914250_124925677	0/0	c0003	267	22	4	6	5	3	4	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	0/0	c0004	267	1	0	0	0	0	1	copy fasta	HEPN1	chr11	124914250	124925677
HERC1_chr15_63603618_63838948	0/0	c0001	14586	51	26	10	6	6	3	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	1/0	c0002	14586	43	5	13	17	0	7	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0003	14586	19	1	9	0	5	4	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0004	14586	13	13	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0005	14586	11	6	5	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0006	14586	8	0	7	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0007	14586	8	8	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0008	14586	7	0	0	7	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0009	14586	6	0	2	0	1	3	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0010	14586	5	4	1	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0011	14586	5	5	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0012	14586	4	1	3	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0013	14586	3	0	0	3	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0014	14586	3	3	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0015	14586	2	2	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/1	c0016	14586	2	0	1	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0017	14586	2	2	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0018	14586	2	2	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0019	14586	2	2	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0020	14586	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0021	14586	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0022	14586	1	0	1	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0023	14586	1	0	0	1	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0024	14586	1	0	0	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0025	14586	1	0	0	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0026	14586	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0027	14586	1	0	0	1	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0028	14586	1	0	0	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0029	14586	1	0	0	1	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0030	14586	1	0	0	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0031	14586	1	0	1	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0032	14586	1	0	0	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0033	14586	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0034	14586	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0035	14586	1	0	1	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0036	14586	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0037	14586	1	0	0	1	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0038	14586	1	0	0	1	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	c0039	14586	1	0	0	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC2_chr15_28106040_28327179	0/0	c0001	14505	42	5	10	15	0	12	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0002	14505	41	2	8	29	0	2	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0003	14505	35	0	7	23	0	5	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0004	14505	19	19	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/1	c0005	14505	9	2	6	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0006	14505	9	8	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	1/0	c0007	14505	7	4	0	0	0	2	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0008	14505	6	5	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0009	14505	4	4	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179