JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
HERC2_chr15_28106040_28327179	0/0	c0010	14505	4	0	0	4	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0011	14505	3	3	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0012	14505	3	2	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0013	14505	3	3	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0014	14505	2	0	1	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0015	14505	2	0	2	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0016	14505	2	2	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0017	14505	2	0	0	2	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0018	14505	2	1	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0019	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0020	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0021	14505	1	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0022	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0023	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0024	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0025	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0026	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0027	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0028	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0029	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0030	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0031	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0032	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0033	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0034	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0035	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0036	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0037	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0038	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0039	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0040	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0041	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0042	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0043	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0044	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0045	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0046	14505	1	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0047	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0048	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0049	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0050	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0051	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0052	14505	1	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0053	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0054	14505	1	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0055	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0056	14505	1	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0057	14505	1	0	0	1	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0058	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0059	14505	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179