JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HERC2_chr15_28106040_28327179	0/0	c0060	14505	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0061	14505	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0062	14505	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0063	14505	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0064	14505	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0065	14505	1	0	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0066	14505	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0067	14505	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0068	14505	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0069	14505	1	0	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0070	14505	1	0	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0071	14505	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0072	14505	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	c0073	14505	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC3_chr4_88587480_88713539	1/1	c0001	3153	179	54	33	78	2	10	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0002	3153	33	0	6	24	3	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0003	3153	32	12	4	14	0	2	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0004	3153	20	12	2	2	0	4	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0005	3153	17	3	3	9	1	1	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0006	3153	5	4	0	0	0	1	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0007	3153	2	1	1	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0008	3153	2	1	1	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0009	3153	2	1	1	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0010	3153	1	0	0	1	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0011	3153	1	1	0	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0012	3153	1	0	1	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	c0013	3153	1	1	0	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC4_chr10_67916905_68080283	0/1	c0001	3150	220	37	33	124	5	20	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	1/0	c0002	3150	109	25	26	37	5	15	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0003	3150	19	16	3	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0004	3150	2	0	2	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0005	3150	1	1	0	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0006	3150	1	1	0	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0007	3150	1	0	0	0	0	1	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0008	3150	1	1	0	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0009	3150	1	0	0	0	0	1	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0010	3150	1	0	0	1	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0011	3150	1	1	0	0	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0012	3150	1	0	0	1	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0013	3150	1	0	0	0	0	1	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	c0014	3150	1	0	0	1	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC5_chr4_88452119_88511163	0/1	c0001	3075	196	63	31	86	2	13	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0002	3075	94	12	21	43	5	13	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0003	3075	13	0	6	7	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0004	3075	8	0	3	0	3	2	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0005	3075	6	5	1	0	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0006	3075	5	5	0	0	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0007	3075	1	0	0	1	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0008	3075	1	1	0	0	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0009	3075	1	0	0	1	0	0	copy fasta	HERC5	chr4	88452119	88511163