JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HERC5_chr4_88452119_88511163	0/0	c0010	3075	1	1	0	0	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	1/0	c0011	3075	1	0	0	0	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0012	3075	1	1	0	0	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0013	3075	1	0	0	1	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	c0014	3075	1	0	0	1	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC6_chr4_88373852_88448097	0/0	c0001	3069	66	20	9	23	0	14	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	1/1	c0002	3069	54	7	8	18	7	12	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0003	3069	7	0	0	7	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0004	3069	6	3	0	2	0	1	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0005	3069	5	0	2	1	1	1	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0006	3069	5	5	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0007	3069	5	4	1	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0008	3069	4	1	1	0	1	1	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0009	3069	3	3	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0010	3069	3	3	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0011	3069	3	0	0	0	1	2	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0012	3069	2	2	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0013	3069	2	2	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0014	3069	2	0	1	0	0	1	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0015	3069	1	0	0	1	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0016	3069	1	0	1	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0017	3069	1	1	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0018	3069	1	1	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0019	3069	1	0	1	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0020	3069	1	0	1	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	c0021	3069	1	0	1	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERPUD1_chr16_56927142_56949864	1/1	c0001	1176	366	79	58	181	14	32	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	c0002	1176	55	14	12	16	2	11	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	c0003	1176	2	2	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	c0004	1176	1	0	1	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	c0005	1176	1	0	0	0	0	1	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	c0006	1176	1	1	0	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	c0007	1176	1	0	1	0	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	c0008	1176	1	0	0	1	0	0	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD2_chr7_35627659_35700135	1/1	c0001	1221	279	75	41	130	9	22	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	c0002	1221	104	10	22	50	5	17	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	c0003	1221	4	0	0	4	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	c0004	1221	2	0	1	0	0	1	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	c0005	1221	1	0	0	1	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	c0006	1221	1	1	0	0	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HERPUD2_chr7_35627659_35700135	0/0	c0007	1221	1	0	0	1	0	0	copy fasta	HERPUD2	chr7	35627659	35700135
HES1_chr3_194131148_194143732	1/1	c0001	843	408	76	84	188	12	46	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	c0002	843	25	22	0	2	0	1	copy fasta	HES1	chr3	194131148	194143732
HES1_chr3_194131148_194143732	0/0	c0003	864	1	0	0	0	0	1	copy fasta	HES1	chr3	194131148	194143732
HES2_chr1_6410232_6424919	1/1	c0001	522	302	78	50	129	10	33	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	c0002	522	58	16	4	37	0	1	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	c0003	522	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES2_chr1_6410232_6424919	0/0	c0004	522	1	1	0	0	0	0	copy fasta	HES2	chr1	6410232	6424919
HES3_chr1_6239179_6250578	1/1	c0001	561	183	60	18	80	9	14	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	c0002	561	174	26	41	74	8	25	copy fasta	HES3	chr1	6239179	6250578