JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HES3_chr1_6239179_6250578	0/0	c0003	561	14	4	3	2	0	5	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	c0004	561	5	1	3	0	1	0	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	c0005	561	3	2	0	0	0	1	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	c0006	561	2	0	1	0	0	1	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	c0007	561	1	0	0	1	0	0	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	c0008	561	1	0	0	1	0	0	copy fasta	HES3	chr1	6239179	6250578
HES3_chr1_6239179_6250578	0/0	c0009	561	1	1	0	0	0	0	copy fasta	HES3	chr1	6239179	6250578
HES4_chr1_993964_1005097	1/1	c0001	666	387	93	84	150	16	42	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	c0002	666	3	0	0	0	0	3	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	c0003	666	1	1	0	0	0	0	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	c0004	666	1	0	0	0	0	1	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	c0005	647	1	0	0	1	0	0	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	c0006	666	1	0	0	1	0	0	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	c0007	666	1	0	0	1	0	0	copy fasta	HES4	chr1	993964	1005097
HES4_chr1_993964_1005097	0/0	c0008	666	1	0	0	1	0	0	copy fasta	HES4	chr1	993964	1005097
HES5_chr1_2523745_2535263	0/1	c0001	501	408	92	71	191	12	41	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	c0002	492	5	0	0	5	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	c0003	504	3	2	1	0	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	c0004	501	3	3	0	0	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	c0005	501	2	0	0	2	0	0	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	c0006	501	2	0	0	0	0	2	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	c0007	501	2	0	0	0	0	2	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	c0008	501	1	0	0	0	0	1	copy fasta	HES5	chr1	2523745	2535263
HES5_chr1_2523745_2535263	0/0	c0009	501	1	1	0	0	0	0	copy fasta	HES5	chr1	2523745	2535263
HES6_chr2_238233267_238245038	1/1	c0001	675	385	93	67	165	14	44	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	c0002	675	30	0	4	26	0	0	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	c0003	675	24	1	9	8	2	4	copy fasta	HES6	chr2	238233267	238245038
HES6_chr2_238233267_238245038	0/0	c0004	675	1	0	0	1	0	0	copy fasta	HES6	chr2	238233267	238245038
HES7_chr17_8115592_8129106	1/1	c0001	693	240	54	44	93	14	33	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	c0002	693	113	3	17	88	0	5	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	c0003	693	70	27	14	25	1	3	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	c0004	693	19	9	1	2	0	7	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	c0005	693	2	0	2	0	0	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	c0006	693	1	0	0	0	1	0	copy fasta	HES7	chr17	8115592	8129106
HES7_chr17_8115592_8129106	0/0	c0007	693	1	1	0	0	0	0	copy fasta	HES7	chr17	8115592	8129106
HESX1_chr3_57192838_57204978	1/1	c0001	558	294	57	69	109	14	43	copy fasta	HESX1	chr3	57192838	57204978
HESX1_chr3_57192838_57204978	0/0	c0002	558	38	34	4	0	0	0	copy fasta	HESX1	chr3	57192838	57204978
HESX1_chr3_57192838_57204978	0/0	c0003	558	1	0	0	1	0	0	copy fasta	HESX1	chr3	57192838	57204978
HESX1_chr3_57192838_57204978	0/0	c0004	558	1	0	0	0	0	1	copy fasta	HESX1	chr3	57192838	57204978
HESX1_chr3_57192838_57204978	0/0	c0005	549	1	0	1	0	0	0	copy fasta	HESX1	chr3	57192838	57204978
HESX1_chr3_57192838_57204978	0/0	c0006	558	1	1	0	0	0	0	copy fasta	HESX1	chr3	57192838	57204978
HEXA_chr15_72335924_72381014	0/1	c0001	1590	261	46	48	130	8	28	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	c0002	1590	36	0	2	31	2	1	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	1/0	c0003	1590	35	30	4	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	c0004	1590	18	17	1	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	c0005	1590	1	1	0	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	c0006	1590	1	0	0	1	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	c0007	1590	1	0	0	0	0	1	copy fasta	HEXA	chr15	72335924	72381014
HEXA_chr15_72335924_72381014	0/0	c0008	1590	1	0	1	0	0	0	copy fasta	HEXA	chr15	72335924	72381014
HEXB_chr5_74680233_74726288	0/1	c0001	1671	231	56	38	97	7	32	copy fasta	HEXB	chr5	74680233	74726288