JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HEXB_chr5_74680233_74726288	0/0	c0002	1671	89	28	18	30	4	9	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	c0003	1671	54	1	12	35	2	4	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	c0004	1671	5	5	0	0	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	1/0	c0005	1671	5	0	2	0	1	1	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	c0006	1671	3	2	1	0	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	c0007	1671	3	2	1	0	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	c0008	1671	1	1	0	0	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	c0009	1671	1	0	0	1	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	c0010	1671	1	1	0	0	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	c0011	1671	1	0	0	1	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	c0012	1671	1	0	0	1	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXB_chr5_74680233_74726288	0/0	c0013	1671	1	0	0	1	0	0	copy fasta	HEXB	chr5	74680233	74726288
HEXD_chr17_82413347_82447645	0/0	c0001	1461	178	41	21	103	5	8	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	1/1	c0002	1461	93	22	25	10	11	23	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0003	1461	75	1	18	46	0	10	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0004	1461	27	21	2	3	0	1	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0005	1461	5	3	2	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0006	1461	4	0	0	4	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0007	1461	3	3	0	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0008	1461	3	2	1	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0009	1461	2	0	2	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0010	1461	1	0	0	1	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0011	1461	1	0	0	1	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0012	1461	1	0	1	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0013	1461	1	1	0	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0014	1461	1	0	0	1	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0015	1461	1	0	0	1	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0016	1461	1	0	0	1	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0017	1461	1	1	0	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0018	1461	1	1	0	0	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXD_chr17_82413347_82447645	0/0	c0019	1461	1	0	0	1	0	0	copy fasta	HEXD	chr17	82413347	82447645
HEXIM1_chr17_45143475_45157099	1/0	c0001	1080	354	89	53	170	7	34	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/1	c0002	1080	81	4	18	38	8	12	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	c0003	1080	2	0	0	0	1	1	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	c0004	1080	1	0	0	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	c0005	1080	1	0	0	0	0	1	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	c0006	1080	1	0	1	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	c0007	1080	1	0	0	1	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM1_chr17_45143475_45157099	0/0	c0008	1080	1	1	0	0	0	0	copy fasta	HEXIM1	chr17	45143475	45157099
HEXIM2_chr17_45156875_45175035	1/1	c0001	861	417	71	79	201	16	48	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	c0002	861	16	15	1	0	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	c0003	861	7	7	0	0	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	c0004	861	1	0	0	1	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	c0005	861	1	0	0	1	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	c0006	861	1	1	0	0	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	c0007	861	1	0	0	1	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	c0008	861	1	0	0	1	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEXIM2_chr17_45156875_45175035	0/0	c0009	861	1	0	0	1	0	0	copy fasta	HEXIM2	chr17	45156875	45175035
HEY1_chr8_79759010_79772767	1/1	c0001	915	457	94	83	218	16	44	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	c0002	915	1	1	0	0	0	0	copy fasta	HEY1	chr8	79759010	79772767