Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKNAD1_chr1_108810901_108862094	0/0	c0042	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0043	2413	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0044	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0045	2511	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0046	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0047	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0048	2511	1	0	0	0	0	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0049	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0050	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0051	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0052	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0053	2511	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0054	2511	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0055	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0056	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0057	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0058	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0059	2511	1	0	0	0	0	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0060	2511	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0061	2511	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0062	2511	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0063	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0064	2511	1	0	1	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0065	2413	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0066	2511	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0067	2511	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0068	2413	1	0	0	1	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0069	2511	1	0	1	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0070	2511	1	1	0	0	0	0	copy fasta	AKNAD1	chr1	108810901	108862094
AKNAD1_chr1_108810901_108862094	0/0	c0071	2511	1	0	0	0	0	1	copy fasta	AKNAD1	chr1	108810901	108862094
AKNA_chr9_114329156_114392982	0/1	c0001	4320	114	12	19	60	8	14	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0002	4320	107	13	27	54	1	12	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0003	4320	26	0	12	6	5	3	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	1/0	c0004	4320	17	1	3	8	2	2	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0005	4320	14	12	2	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0006	4320	13	8	0	2	0	3	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0007	4320	8	8	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0008	4320	7	0	1	4	2	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0009	4320	7	0	1	6	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0010	4320	6	6	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0011	4320	6	2	1	3	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0012	4320	6	5	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0013	4320	6	5	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0014	4320	5	4	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0015	4320	4	0	0	4	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0016	4320	3	0	0	3	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0017	4320	3	2	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0018	4320	3	3	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0019	4320	3	3	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0020	4320	2	0	2	0	0	0	copy fasta	AKNA	chr9	114329156	114392982