JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HEY1_chr8_79759010_79772767	0/0	c0003	915	1	0	1	0	0	0	copy fasta	HEY1	chr8	79759010	79772767
HEY1_chr8_79759010_79772767	0/0	c0004	915	1	1	0	0	0	0	copy fasta	HEY1	chr8	79759010	79772767
HEY2_chr6_125744632_125766269	1/1	c0001	1014	367	79	68	170	15	33	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	c0002	1014	15	7	0	8	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	c0003	1014	12	1	4	2	2	3	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	c0004	1014	2	0	0	2	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	c0005	1014	1	0	0	1	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	c0006	1014	1	1	0	0	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	c0007	1014	1	0	0	1	0	0	copy fasta	HEY2	chr6	125744632	125766269
HEY2_chr6_125744632_125766269	0/0	c0008	1014	1	0	0	0	1	0	copy fasta	HEY2	chr6	125744632	125766269
HEYL_chr1_39618435_39644643	0/1	c0001	987	414	85	77	189	16	46	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0002	987	9	0	0	9	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	1/0	c0003	987	3	0	0	0	0	2	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0004	987	2	0	2	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0005	987	2	2	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0006	987	2	2	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0007	987	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0008	987	1	0	1	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0009	987	1	1	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0010	987	1	1	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0011	987	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0012	987	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0013	987	1	1	0	0	0	0	copy fasta	HEYL	chr1	39618435	39644643
HEYL_chr1_39618435_39644643	0/0	c0014	987	1	0	0	1	0	0	copy fasta	HEYL	chr1	39618435	39644643
HFE_chr6_26082429_26103343	1/0	c0001	1047	363	96	66	153	7	40	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/1	c0002	1047	26	1	5	7	5	7	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	c0003	1047	4	0	1	0	2	1	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	c0004	1047	3	1	2	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	c0005	1047	2	0	2	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	c0006	1047	1	1	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	c0007	1047	1	1	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	c0008	1047	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	c0009	1047	1	0	0	1	0	0	copy fasta	HFE	chr6	26082429	26103343
HFM1_chr1_91255766_91409837	0/0	c0001	4308	232	42	44	114	6	26	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0002	4308	48	6	6	30	1	5	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/1	c0003	4308	31	15	9	0	4	2	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0004	4308	22	12	3	0	0	7	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0005	4308	8	0	0	8	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0006	4308	3	0	0	3	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0007	4308	3	0	0	3	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0008	4308	2	2	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0009	4308	2	1	0	0	0	1	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0010	4308	2	2	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0011	4308	1	1	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0012	4308	1	1	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0013	4308	1	1	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	1/0	c0014	4308	1	0	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0015	4308	1	1	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0016	4308	1	0	0	0	0	1	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0017	4308	1	1	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837