JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HFM1_chr1_91255766_91409837	0/0	c0018	4308	1	0	0	0	1	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	c0019	4308	1	1	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HGD_chr3_120623172_120687239	0/1	c0001	1338	236	63	58	82	9	23	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	1/0	c0002	1338	112	13	12	63	4	19	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	c0003	1338	5	4	0	0	1	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	c0004	1338	5	0	1	1	2	1	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	c0005	1338	5	4	1	0	0	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	c0006	1338	3	0	2	0	0	1	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	c0007	1338	2	2	0	0	0	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	c0008	1338	2	2	0	0	0	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	c0009	1338	1	0	0	1	0	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	c0010	1338	1	0	0	1	0	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	c0011	1338	1	1	0	0	0	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	c0012	1338	1	1	0	0	0	0	copy fasta	HGD	chr3	120623172	120687239
HGFAC_chr4_3436968_3454486	0/1	c0001	1968	127	14	31	60	9	12	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0002	1968	65	1	7	53	1	3	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	1/0	c0003	1968	41	13	8	4	2	13	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0004	1968	35	2	0	22	2	9	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0005	1968	25	7	6	10	0	2	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0006	1968	17	14	3	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0007	1968	15	7	7	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0008	1968	14	3	4	6	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0009	1968	13	0	4	9	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0010	1968	8	8	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0011	1968	5	0	0	5	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0012	1968	4	3	1	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0013	1968	4	4	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0014	1968	4	1	0	2	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0015	1968	4	0	0	4	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0016	1968	4	0	3	0	1	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0017	1968	4	0	0	4	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0018	1968	3	0	3	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0019	1968	3	0	0	3	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0020	1968	3	3	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0021	1968	3	0	0	3	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0022	1968	3	3	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0023	1968	3	1	0	0	0	2	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0024	1968	2	2	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0025	1968	2	0	1	0	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0026	1968	2	0	1	0	1	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0027	1968	2	2	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0028	1968	2	0	1	0	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0029	1968	2	0	0	2	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0030	1968	2	0	0	1	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0031	1968	2	0	2	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0032	1968	2	0	0	2	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0033	1968	2	2	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0034	1992	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0035	1968	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0036	1968	1	0	0	0	0	1	copy fasta	HGFAC	chr4	3436968	3454486