JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HGFAC_chr4_3436968_3454486	0/0	c0037	1968	1	0	0	0	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0038	1968	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0039	1968	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0040	1968	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0041	1968	1	1	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0042	765	1	0	1	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0043	1968	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0044	1968	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0045	1968	1	1	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0046	1968	1	0	0	0	1	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0047	1968	1	1	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0048	1968	1	1	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0049	1968	1	0	1	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0050	1968	1	0	0	0	1	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0051	1968	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0052	1968	1	1	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0053	1968	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0054	1968	1	0	0	0	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0055	1968	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0056	1968	1	0	0	0	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0057	1968	1	0	1	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0058	1968	1	0	1	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0059	1968	1	1	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	c0060	1968	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGF_chr7_81694010_81775047	1/1	c0001	2187	225	54	43	93	4	29	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	c0002	2187	33	26	3	1	0	3	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	c0003	2187	3	0	2	0	0	1	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	c0004	2187	3	0	0	3	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	c0005	2187	2	2	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	c0006	2187	1	0	0	0	0	1	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	c0007	2187	1	0	0	1	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	c0008	2187	1	0	0	1	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	c0009	2187	1	0	0	1	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	c0010	2187	1	1	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	c0011	2187	1	1	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGH1_chr8_144132774_144145851	1/1	c0001	1173	288	83	53	113	5	32	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0002	1173	37	1	3	25	0	8	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0003	1173	5	0	3	0	1	1	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0004	1173	2	0	0	2	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0005	1173	2	2	0	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0006	1173	1	0	0	0	0	1	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0007	1173	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0008	1173	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0009	1173	1	1	0	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0010	1173	1	1	0	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0011	1173	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0012	1181	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	c0013	1173	1	0	1	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGSNAT_chr8_43135464_43207855	0/1	c0001	1908	196	48	58	66	2	21	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	c0002	1908	23	22	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855