JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HGSNAT_chr8_43135464_43207855	0/0	c0003	1908	7	6	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	1/0	c0004	1908	4	2	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	c0005	1908	1	1	0	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	c0006	1908	1	0	0	0	0	1	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	c0007	1908	1	0	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	c0008	1908	1	1	0	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGS_chr17_81679011_81707121	1/0	c0001	2334	268	44	56	120	12	35	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0002	2334	61	0	4	52	2	3	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/1	c0003	2334	37	22	7	0	2	5	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0004	2334	11	9	2	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0005	2334	3	0	3	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0006	2334	3	3	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0007	2334	2	0	0	0	0	2	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0008	2334	2	1	1	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0009	2334	2	0	2	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0010	2334	2	2	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0011	2334	2	2	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0012	2334	1	1	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0013	2334	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0014	2334	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0015	2334	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0016	2334	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0017	2334	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0018	2334	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0019	2334	1	0	1	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0020	2334	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0021	2334	1	1	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0022	2334	1	1	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0023	2334	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0024	2334	1	1	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0025	2334	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0026	2334	1	0	0	0	0	1	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0027	2324	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0028	2334	1	1	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0029	2334	1	0	1	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0030	2334	1	1	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0031	2334	1	0	1	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	c0032	2334	1	1	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HHATL_chr3_42687663_42707798	0/0	c0001	1515	246	51	54	100	10	31	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	1/0	c0002	1515	83	14	19	32	3	14	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0003	1515	29	0	6	23	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0004	1515	14	14	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0005	1515	12	0	0	12	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0006	1515	5	4	0	1	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0007	1515	3	3	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0008	1515	2	2	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0009	1515	2	0	2	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0010	1515	2	0	2	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0011	1515	2	0	2	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0012	1515	2	2	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798