JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HHATL_chr3_42687663_42707798	0/0	c0013	1515	1	0	0	1	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/1	c0014	1515	1	0	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0015	1515	1	0	1	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0016	1515	1	1	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0017	1515	1	1	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0018	1515	1	0	0	1	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0019	1515	1	1	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0020	1515	1	0	0	0	0	1	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0021	1515	1	1	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	c0022	1515	1	0	0	0	1	0	copy fasta	HHATL	chr3	42687663	42707798
HHAT_chr1_210323902_210681290	0/1	c0001	1482	149	67	26	38	4	13	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	1/0	c0002	1482	61	10	12	30	2	6	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0003	1482	35	0	10	18	4	3	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0004	1482	9	0	5	0	0	4	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0005	1482	2	2	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0006	1482	2	0	0	2	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0007	1482	2	2	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0008	1482	1	0	0	1	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0009	1482	1	0	0	1	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0010	1482	1	1	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0011	1482	1	1	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0012	1482	1	1	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0013	1482	1	0	0	1	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0014	1482	1	0	1	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	c0015	1482	1	0	0	1	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHEX_chr10_92684955_92700647	1/1	c0001	813	354	93	73	126	16	44	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	c0002	813	17	0	5	12	0	0	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	c0003	813	1	1	0	0	0	0	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	c0004	813	1	0	0	1	0	0	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	c0005	813	1	0	0	1	0	0	copy fasta	HHEX	chr10	92684955	92700647
HHIPL1_chr14_99640129_99685569	1/1	c0001	2349	126	45	19	41	7	12	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0002	2349	125	23	23	52	4	23	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0003	2349	79	13	20	41	2	3	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0004	2349	20	5	7	7	1	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0005	2349	8	0	5	0	1	2	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0006	2349	3	3	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0007	2349	2	0	0	1	1	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0008	2349	1	0	0	1	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0009	2349	1	0	0	0	0	1	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0010	2349	1	0	0	1	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0011	2349	1	0	0	1	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0012	2349	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0013	2349	1	0	0	0	0	1	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0014	2374	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0015	2349	1	0	0	1	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0016	2349	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0017	2349	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	c0018	2349	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL2_chr1_222517264_222553104	0/0	c0001	2175	93	6	16	53	5	13	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0002	2175	67	0	17	50	0	0	copy fasta	HHIPL2	chr1	222517264	222553104