JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HHIPL2_chr1_222517264_222553104	1/0	c0003	2175	62	23	5	24	3	6	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0004	2175	56	12	13	20	1	10	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0005	2175	48	20	7	17	1	3	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/1	c0006	2175	31	10	6	12	1	1	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0007	2175	15	0	0	12	0	3	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0008	2175	15	14	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0009	2175	9	8	0	1	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0010	2175	4	0	2	2	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0011	2175	3	0	2	0	0	1	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0012	2175	3	0	0	3	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0013	2175	1	0	0	0	1	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0014	2175	1	0	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0015	2175	1	0	0	0	0	1	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0016	2175	1	0	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0017	2175	1	1	0	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0018	2175	1	0	0	1	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0019	2175	1	0	0	1	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0020	2175	1	0	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0021	2175	1	1	0	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0022	2175	1	0	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0023	2175	1	1	0	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	c0024	2175	1	0	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIP_chr4_144641156_144750271	1/1	c0001	2103	300	73	43	148	8	26	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	c0002	2103	8	7	1	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	c0003	2103	4	0	2	0	2	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	c0004	2103	2	0	0	2	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	c0005	2103	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	c0006	2103	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHLA1_chr8_132056480_132116157	0/1	c0001	1596	132	23	22	62	4	20	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0002	1596	61	13	23	17	2	6	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0003	1596	42	11	4	21	1	5	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	1/0	c0004	1596	36	0	5	26	1	3	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0005	1596	32	13	8	10	1	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0006	1596	21	7	8	2	1	3	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0007	1596	12	6	2	2	0	2	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0008	1596	7	7	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0009	1596	6	6	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0010	1596	3	0	0	3	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0011	1596	3	3	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0012	1596	3	0	2	0	0	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0013	1596	3	0	0	0	2	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0014	1596	3	1	0	2	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0015	1596	2	0	0	2	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0016	1596	2	2	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0017	1596	1	0	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0018	1596	1	0	0	0	0	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0019	1596	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0020	1596	1	0	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0021	1596	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0022	1596	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157