JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HHLA1_chr8_132056480_132116157	0/0	c0023	1596	1	0	0	1	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0024	1596	1	0	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0025	1596	1	0	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0026	1596	1	0	0	0	0	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0027	1596	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	c0028	1596	1	0	0	0	0	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA2_chr3_108291548_108383285	1/0	c0001	1245	81	7	4	56	1	12	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0002	1245	66	0	12	49	0	5	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/1	c0003	1245	53	21	20	0	4	7	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0004	1245	42	10	5	27	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0005	1245	36	16	7	7	2	4	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0006	1245	24	1	10	0	5	8	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0007	1245	6	6	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0008	1245	5	5	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0009	1245	4	3	1	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0010	1245	2	0	0	0	0	2	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0011	1245	1	0	1	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0012	1245	1	1	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	c0013	1245	1	0	0	1	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HIBADH_chr7_27520442_27667883	1/1	c0001	1011	223	73	47	65	11	25	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	0/0	c0002	1011	91	6	21	48	3	13	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	0/0	c0003	1011	7	0	0	7	0	0	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	0/0	c0004	1011	3	3	0	0	0	0	copy fasta	HIBADH	chr7	27520442	27667883
HIBADH_chr7_27520442_27667883	0/0	c0005	1011	2	2	0	0	0	0	copy fasta	HIBADH	chr7	27520442	27667883
HIBCH_chr2_190198920_190324826	1/0	c0001	1161	148	32	17	83	3	12	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	c0002	1161	107	17	14	70	1	5	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/1	c0003	1161	100	22	26	28	8	15	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	c0004	1161	3	3	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	c0005	1161	2	0	0	0	2	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	c0006	1161	2	2	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	c0007	1161	2	2	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	c0008	1161	2	2	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	c0009	1161	1	0	0	1	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	c0010	1161	1	0	1	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIC1_chr17_2050103_2068241	1/1	c0001	2145	318	64	46	155	11	40	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0002	2145	58	19	24	11	0	4	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0003	2145	15	0	0	9	1	5	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0004	2145	7	7	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0005	2145	3	0	1	0	2	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0006	2145	2	1	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0007	2145	1	0	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0008	2145	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0009	2145	1	1	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0010	2145	1	0	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0011	2145	1	0	0	0	0	1	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0012	2145	1	1	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0013	2145	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0014	2145	1	0	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0015	2145	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	c0016	2145	1	0	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241