JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HIC1_chr17_2050103_2068241	0/0	c0017	2133	1	1	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC2_chr22_21412371_21456463	0/0	c0001	1848	249	73	52	88	8	28	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	1/0	c0002	1848	14	0	0	5	0	8	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	c0003	1848	7	1	0	6	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/1	c0004	1848	5	2	1	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	c0005	1848	4	0	1	3	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	c0006	1848	2	0	0	0	0	2	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	c0007	1848	2	0	0	2	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	c0008	1848	2	0	0	2	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	c0009	1848	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	c0010	1848	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	c0011	1848	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HID1_chr17_74945742_74977759	0/0	c0001	2367	89	22	30	20	2	15	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0002	2367	70	2	5	59	0	4	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/1	c0003	2367	67	10	11	34	7	4	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0004	2367	66	13	21	16	4	12	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0005	2367	16	14	2	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0006	2367	14	13	1	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	1/0	c0007	2367	6	1	1	0	0	3	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0008	2367	6	5	1	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0009	2367	6	5	1	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0010	2367	4	3	1	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0011	2367	3	0	1	0	2	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0012	2367	2	0	0	0	0	2	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0013	2367	2	2	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0014	2367	2	0	0	0	0	2	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0015	2367	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0016	2367	1	0	1	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0017	2367	1	0	0	1	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0018	2367	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0019	2367	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0020	2367	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0021	2367	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0022	2367	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0023	2367	1	0	0	0	1	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0024	2367	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	c0025	2367	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HIF1AN_chr10_100530943_100564998	1/1	c0001	1050	269	82	47	103	10	25	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	c0002	1050	45	1	9	24	2	9	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	c0003	1050	4	1	0	3	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	c0004	1050	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	c0005	1050	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1A_chr14_61690513_61753258	1/1	c0001	2481	275	64	37	143	9	20	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	c0002	2481	25	3	9	9	1	3	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	c0003	2481	7	4	1	0	1	1	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	c0004	2481	5	0	0	5	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	c0005	2481	3	2	0	0	1	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	c0006	2481	1	1	0	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	c0007	2481	1	1	0	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	c0008	2481	1	0	0	1	0	0	copy fasta	HIF1A	chr14	61690513	61753258