JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HIF1A_chr14_61690513_61753258	0/0	c0009	2481	1	0	1	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	c0010	2481	1	1	0	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	c0011	2481	1	0	0	1	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	c0012	2481	1	0	0	1	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF3A_chr19_46292042_46348433	0/1	c0001	2010	141	33	28	46	12	21	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0002	2010	87	0	15	55	2	15	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	1/0	c0003	2010	46	12	5	21	1	6	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0004	2010	29	4	1	23	1	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0005	2010	25	2	5	18	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0006	2010	22	8	9	5	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0007	2010	17	0	2	14	0	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0008	2010	11	5	2	3	0	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0009	2010	7	6	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0010	2010	5	4	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0011	2010	2	1	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0012	2010	2	2	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0013	2010	2	0	0	0	0	2	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0014	2010	2	0	0	1	0	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0015	2010	2	2	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0016	2010	2	0	0	2	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0017	2010	2	1	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0018	2010	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0019	2010	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0020	2010	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0021	2010	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0022	2010	1	0	0	0	0	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0023	2010	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0024	2010	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0025	2010	1	0	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0026	2010	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0027	2010	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0028	2010	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0029	2010	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0030	2010	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	c0031	2010	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIGD1A_chr3_42777908_42809490	1/1	c0001	282	398	89	80	166	12	49	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	c0002	282	1	1	0	0	0	0	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	c0003	282	1	0	0	0	0	1	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1B_chr17_44842883_44855476	0/0	c0001	300	194	57	26	81	7	23	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	1/0	c0002	300	157	20	34	84	6	12	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	0/1	c0003	300	60	13	21	17	2	6	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	0/0	c0004	300	2	0	1	0	1	0	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	0/0	c0005	300	1	0	0	0	0	1	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	0/0	c0006	300	1	1	0	0	0	0	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	0/0	c0007	300	1	1	0	0	0	0	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1C_chr12_50947544_50975607	1/0	c0001	294	250	62	58	93	11	25	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/1	c0002	294	123	13	14	78	3	14	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	c0003	294	2	2	0	0	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	c0004	294	2	0	0	2	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	c0005	294	1	0	0	0	0	1	copy fasta	HIGD1C	chr12	50947544	50975607