JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HIGD1C_chr12_50947544_50975607	0/0	c0006	294	1	0	0	1	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	c0007	294	1	1	0	0	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD2A_chr5_176383751_176394761	1/1	c0001	321	421	81	73	206	16	43	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	c0002	321	19	13	3	0	2	1	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	c0003	321	1	0	0	1	0	0	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	c0004	321	1	0	0	1	0	0	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2B_chr15_72670798_72691182	1/1	c0001	321	395	70	78	185	16	44	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	c0002	321	36	21	0	15	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	c0003	321	2	2	0	0	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	c0004	321	1	1	0	0	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	c0005	321	1	1	0	0	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	c0006	321	1	1	0	0	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIKESHI_chr11_86297240_86350943	1/1	c0001	594	396	82	64	184	14	50	copy fasta	HIKESHI	chr11	86297240	86350943
HIKESHI_chr11_86297240_86350943	0/0	c0002	594	2	2	0	0	0	0	copy fasta	HIKESHI	chr11	86297240	86350943
HILPDA_chr7_128450878_128463418	1/1	c0001	192	421	89	76	194	16	44	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	c0002	192	1	1	0	0	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	c0003	192	1	1	0	0	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	c0004	192	1	1	0	0	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HINFP_chr11_119116580_119141059	0/1	c0001	1554	204	64	32	70	11	26	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0002	1554	174	15	18	120	3	18	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0003	1554	6	6	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0004	1554	4	4	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0005	1554	3	1	2	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	1/0	c0006	1554	2	0	1	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0007	1554	1	0	1	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0008	1554	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0009	1554	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0010	1554	1	0	1	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0011	1554	1	0	0	1	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0012	1554	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0013	1554	1	0	0	1	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0014	1554	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0015	1554	1	0	1	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0016	1554	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	c0017	1554	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINT1_chr5_131154027_131170256	1/1	c0001	381	379	55	68	198	14	42	copy fasta	HINT1	chr5	131154027	131170256
HINT1_chr5_131154027_131170256	0/0	c0002	381	43	35	8	0	0	0	copy fasta	HINT1	chr5	131154027	131170256
HINT1_chr5_131154027_131170256	0/0	c0003	381	1	0	1	0	0	0	copy fasta	HINT1	chr5	131154027	131170256
HINT1_chr5_131154027_131170256	0/0	c0004	381	1	0	1	0	0	0	copy fasta	HINT1	chr5	131154027	131170256
HINT2_chr9_35807960_35820042	1/1	c0001	492	418	88	74	202	12	40	copy fasta	HINT2	chr9	35807960	35820042
HINT2_chr9_35807960_35820042	0/0	c0002	492	2	0	2	0	0	0	copy fasta	HINT2	chr9	35807960	35820042
HINT3_chr6_125951770_125985244	0/1	c0001	549	165	57	27	57	9	14	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	1/0	c0002	549	100	33	29	11	9	17	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	c0003	549	1	1	0	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	c0004	549	1	1	0	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	c0005	549	1	0	0	0	0	1	copy fasta	HINT3	chr6	125951770	125985244
HIP1R_chr12_122830457_122867961	0/1	c0001	3207	201	34	63	71	11	21	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0002	3207	64	14	4	32	1	13	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0003	3207	14	13	1	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0004	3207	11	0	0	11	0	0	copy fasta	HIP1R	chr12	122830457	122867961