Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKNA_chr9_114329156_114392982	0/0	c0021	4320	2	1	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0022	4320	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0023	4320	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0024	4320	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0025	4320	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0026	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0027	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0028	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0029	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0030	4320	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0031	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0032	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0033	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0034	4320	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0035	4320	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0036	4320	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0037	4320	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0038	4320	1	0	0	0	0	1	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0039	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0040	4320	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0041	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0042	4320	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0043	4320	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0044	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0045	4320	1	0	1	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0046	4320	1	0	0	1	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKNA_chr9_114329156_114392982	0/0	c0047	4320	1	1	0	0	0	0	copy fasta	AKNA	chr9	114329156	114392982
AKR1A1_chr1_45545826_45575049	1/1	c0001	978	342	78	70	143	12	37	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	c0002	978	3	0	3	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	c0003	978	2	1	1	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	c0004	978	1	0	0	0	0	1	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	c0005	978	1	1	0	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	c0006	978	1	1	0	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	c0007	978	1	1	0	0	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1A1_chr1_45545826_45575049	0/0	c0008	978	1	0	0	1	0	0	copy fasta	AKR1A1	chr1	45545826	45575049
AKR1B10_chr7_134522567_134546412	0/0	c0001	951	185	19	34	104	9	19	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/1	c0002	951	158	66	29	35	3	24	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0003	951	42	0	0	42	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0004	951	27	0	13	14	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0005	952	7	1	1	4	0	1	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0006	952	6	1	1	2	0	2	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	1/0	c0007	951	6	0	3	0	0	2	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0008	951	4	4	0	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0009	952	3	0	0	3	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0010	951	2	2	0	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0011	951	1	1	0	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0012	951	1	0	0	1	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0013	951	1	0	1	0	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0014	951	1	0	0	1	0	0	copy fasta	AKR1B10	chr7	134522567	134546412
AKR1B10_chr7_134522567_134546412	0/0	c0015	952	1	0	0	1	0	0	copy fasta	AKR1B10	chr7	134522567	134546412