JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HIP1R_chr12_122830457_122867961	1/0	c0005	3207	10	2	1	0	0	6	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0006	3207	6	6	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0007	3207	5	0	0	5	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0008	3207	4	0	1	0	3	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0009	3207	3	3	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0010	3207	2	2	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0011	3207	2	0	2	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0012	3207	2	0	0	2	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0013	3207	2	0	1	0	0	1	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0014	3207	2	0	0	2	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0015	3207	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0016	3207	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0017	3207	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0018	3207	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0019	3207	1	0	0	0	0	1	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0020	3207	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0021	3207	1	0	0	0	0	1	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0022	3207	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0023	3207	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0024	3207	1	0	1	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0025	3207	1	0	1	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0026	3207	1	0	0	0	0	1	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0027	3207	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0028	3207	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0029	3207	1	0	0	0	1	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0030	3192	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0031	3207	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0032	3207	1	0	1	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0033	3207	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	c0034	3207	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1_chr7_75528298_75743941	1/1	c0001	3114	199	63	41	53	13	27	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0002	3114	11	5	2	2	0	2	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0003	3114	11	4	3	0	3	1	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0004	3114	6	0	0	6	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0005	3114	4	0	4	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0006	3114	3	2	1	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0007	3114	3	2	0	1	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0008	3114	2	2	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0009	3114	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0010	3114	1	0	0	0	0	1	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0011	3114	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0012	3114	1	0	0	1	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0013	3114	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0014	3114	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0015	3114	1	0	0	0	0	1	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0016	3114	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0017	3114	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0018	3114	1	0	0	1	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0019	3114	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0020	3114	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941