JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HIP1_chr7_75528298_75743941	0/0	c0021	3114	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0022	3114	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	c0023	3114	1	0	1	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIPK1_chr1_113924324_113982869	0/0	c0001	3633	177	44	32	72	8	21	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	1/1	c0002	3633	96	8	23	40	4	19	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0003	3633	85	25	11	45	2	2	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0004	3633	10	6	2	1	0	1	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0005	3633	5	0	0	5	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0006	3633	2	2	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0007	3633	1	1	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0008	3633	1	1	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0009	3633	1	1	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0010	3633	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0011	3633	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0012	3633	1	0	0	0	0	1	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	c0013	3633	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK2_chr7_139556570_139782998	0/0	c0001	3597	50	31	9	8	0	2	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	1/1	c0002	3597	39	7	13	8	4	5	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0003	3597	21	19	1	0	0	1	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0004	3597	19	8	6	4	1	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0005	3597	7	4	0	0	1	2	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0006	3597	4	3	0	0	0	1	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0007	3597	3	1	2	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0008	3597	3	0	1	0	1	1	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0009	3597	2	2	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0010	3597	1	0	0	0	1	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0011	3597	1	1	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0012	3597	1	1	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0013	3597	1	1	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0014	3597	1	1	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	c0015	3597	1	1	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK3_chr11_33252381_33362023	1/1	c0001	3648	325	74	58	149	16	26	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	c0002	3648	5	4	1	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	c0003	3648	5	0	0	5	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	c0004	3648	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	c0005	3648	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	c0006	3648	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	c0007	3648	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	c0008	3648	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	c0009	3648	1	0	1	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	c0010	3648	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK4_chr19_40374271_40395181	1/1	c0001	1851	293	83	54	103	16	35	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0002	1851	48	0	8	34	2	4	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0003	1851	7	0	7	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0004	1851	4	4	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0005	1851	3	0	0	3	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0006	1851	3	3	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0007	1851	3	0	0	3	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0008	1851	3	0	0	3	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0009	1851	2	0	0	2	0	0	copy fasta	HIPK4	chr19	40374271	40395181