JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HIPK4_chr19_40374271_40395181	0/0	c0010	1851	2	2	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0011	1851	2	2	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0012	1851	1	0	0	1	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0013	1851	1	1	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0014	1851	1	0	0	1	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0015	1851	1	0	1	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0016	1851	1	0	0	0	0	1	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0017	1851	1	1	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0018	1851	1	0	0	1	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0019	1851	1	1	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0020	1851	1	0	0	1	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0021	1851	1	1	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0022	1851	1	1	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	c0023	1851	1	1	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIRA_chr22_19325698_19436733	1/1	c0001	3054	345	76	63	169	8	27	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0002	3054	3	0	1	2	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0003	3054	2	0	2	0	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0004	3054	2	0	2	0	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0005	3054	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0006	3054	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0007	3054	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0008	3054	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0009	3054	1	0	0	0	0	1	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0010	3054	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0011	3054	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0012	3054	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0013	3054	1	1	0	0	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0014	3054	1	1	0	0	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0015	3054	1	1	0	0	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	c0016	3054	1	1	0	0	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRIP3_chr16_29987330_30000617	1/1	c0001	1671	321	75	58	136	14	36	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0002	1671	9	0	0	9	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0003	1671	8	7	1	0	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0004	1671	3	3	0	0	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0005	1671	2	0	0	2	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0006	1671	1	0	0	1	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0007	1671	1	0	0	1	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0008	1671	1	1	0	0	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0009	1671	1	0	1	0	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0010	1671	1	0	0	1	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0011	1671	1	0	0	1	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	c0012	1671	1	0	0	1	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIVEP1_chr6_12007312_12169999	0/1	c0001	8157	75	7	18	41	2	6	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0002	8157	64	12	12	30	4	6	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0003	8157	61	3	14	29	1	14	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0004	8157	35	6	1	16	4	8	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	1/0	c0005	8157	15	12	2	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0006	8157	13	13	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0007	8157	10	0	10	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0008	8157	8	1	3	3	0	1	copy fasta	HIVEP1	chr6	12007312	12169999