JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HIVEP1_chr6_12007312_12169999	0/0	c0009	8157	5	5	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0010	8157	5	0	0	5	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0011	8157	4	0	0	4	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0012	8157	3	2	1	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0013	8157	3	3	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0014	8157	2	2	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0015	8157	2	2	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0016	8157	2	1	1	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0017	8157	2	2	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0018	8157	2	0	2	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0019	8157	2	2	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0020	8157	2	0	0	0	0	2	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0021	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0022	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0023	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0024	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0025	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0026	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0027	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0028	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0029	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0030	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0031	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0032	8157	1	0	1	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0033	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0034	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0035	8157	1	0	1	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0036	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0037	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0038	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0039	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0040	8157	1	0	0	0	0	1	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0041	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0042	8157	1	0	0	0	1	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0043	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0044	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0045	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0046	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0047	8157	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0048	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	c0049	8157	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP2_chr6_142746469_142950176	0/1	c0001	7341	123	21	26	60	4	11	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0002	7341	34	7	14	9	0	4	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0003	7341	17	1	4	3	2	7	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0004	7341	15	7	3	1	2	2	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0005	7341	12	11	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0006	7341	8	0	4	0	0	4	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0007	7341	8	0	0	8	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0008	7341	8	2	0	5	0	1	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0009	7341	6	1	4	0	1	0	copy fasta	HIVEP2	chr6	142746469	142950176