JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HIVEP2_chr6_142746469_142950176	0/0	c0010	7341	5	0	0	5	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0011	7341	4	4	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0012	7341	3	3	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0013	7341	3	0	0	0	1	2	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0014	7341	3	3	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0015	7341	3	2	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0016	7341	3	1	2	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0017	7341	3	0	2	0	1	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0018	7341	2	2	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0019	7341	2	0	0	0	0	2	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0020	7341	2	0	0	2	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	1/0	c0021	7341	2	0	0	0	0	1	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0022	7341	2	1	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0023	7341	2	2	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0024	7341	2	2	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0025	7341	1	0	0	0	1	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0026	7341	1	0	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0027	7341	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0028	7341	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0029	7341	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0030	7341	1	0	0	1	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0031	7341	1	0	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0032	7341	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0033	7341	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0034	7341	1	0	0	0	0	1	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0035	7341	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0036	7341	1	0	0	0	0	1	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0037	7341	1	0	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0038	7341	1	0	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0039	7341	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	c0040	7341	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP3_chr1_41501365_41923922	0/0	c0001	7221	27	5	8	14	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0002	7221	22	5	4	10	0	3	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0003	7221	11	2	1	2	3	3	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0004	7221	8	0	6	0	1	1	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0005	7221	5	0	1	2	0	2	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0006	7221	4	4	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0007	7221	4	3	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0008	7221	3	0	3	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0009	7221	3	3	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0010	7221	3	3	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0011	7221	3	3	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0012	7221	3	3	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0013	7221	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0014	7221	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0015	7221	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0016	7221	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0017	7221	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0018	7221	2	1	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0019	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922