JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HIVEP3_chr1_41501365_41923922	0/0	c0020	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0021	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0022	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0023	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0024	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0025	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0026	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0027	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0028	7221	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0029	7221	1	0	0	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0030	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0031	7221	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0032	7221	1	0	0	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0033	7221	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0034	7221	1	0	0	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0035	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0036	7221	1	0	0	0	0	1	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0037	7221	1	0	0	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0038	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0039	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0040	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0041	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0042	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0043	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	c0044	7221	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HJURP_chr2_233831702_233859535	0/1	c0001	2247	93	4	23	44	7	14	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0002	2247	61	30	0	21	0	10	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	1/0	c0003	2247	55	5	13	21	4	11	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0004	2247	52	6	3	41	0	2	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0005	2247	26	0	7	16	1	2	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0006	2247	26	6	6	11	0	3	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0007	2247	25	6	0	19	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0008	2247	22	0	3	14	3	2	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0009	2247	18	0	0	18	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0010	2247	15	8	6	0	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0011	2247	12	10	1	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0012	2247	5	5	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0013	2247	3	3	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0014	2247	3	0	0	3	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0015	2247	3	3	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0016	2247	3	0	2	0	1	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0017	2247	3	1	1	0	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0018	2247	2	0	2	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0019	2247	2	2	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0020	2247	1	0	1	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0021	2247	1	0	0	0	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0022	2247	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0023	2247	1	0	0	0	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0024	2247	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0025	2247	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535