JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
HJURP_chr2_233831702_233859535	0/0	c0026	2247	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0027	2247	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0028	2247	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0029	2247	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0030	2247	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0031	2247	1	0	1	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0032	2247	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0033	2247	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0034	2247	1	0	1	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0035	2247	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0036	2247	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0037	2247	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0038	2247	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0039	2247	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	c0040	2247	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJV_chr1_146012470_146026735	1/1	c0001	1281	365	68	70	174	12	39	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0002	1281	4	4	0	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0003	1281	2	0	0	2	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0004	1281	2	2	0	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0005	1281	2	2	0	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0006	1281	1	0	0	0	0	1	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0007	1281	1	1	0	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0008	1281	1	0	1	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0009	1281	1	1	0	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0010	1281	1	0	0	1	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0011	1281	1	0	0	1	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	c0012	1281	1	0	1	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HK1_chr10_69273496_69406882	0/1	c0001	2766	107	18	21	43	5	19	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	1/0	c0002	2766	54	5	11	34	1	2	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0003	2766	36	7	11	9	3	6	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0004	2766	19	2	7	8	1	1	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0005	2766	14	13	1	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0006	2766	6	5	1	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0007	2766	5	1	0	3	0	1	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0008	2766	5	5	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0009	2766	4	0	0	4	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0010	2766	4	3	1	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0011	2766	4	4	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0012	2766	3	3	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0013	2766	2	2	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0014	2766	2	2	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0015	2766	2	2	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0016	2766	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0017	2766	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0018	2766	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0019	2766	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0020	2766	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0021	2766	1	0	0	1	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0022	2766	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	c0023	2766	1	0	1	0	0	0	copy fasta	HK1	chr10	69273496	69406882